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Plant-Associated Microbe Gene Ontology (PAMGO)/Oomycete Bioinformatics Resources Training Workshops
Download the final agenda: pagmo-agenda.pdf (updated 7/11)
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Monday, July 14, 2008
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8:15 am
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Registration and Breakfast (Provided)
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9:15 am
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Welcome (Brett Tyler-VBI)
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9:25 am
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Overview (Trudy Torto-Alalibo-VBI)
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9:40 am
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Structural Annotation (Sucheta Tripathy-VBI)
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10:30 am |
Break
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10.45 am
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Introduction to Functional Annotation (Michelle Gwinn-Giglio -Univ of Maryland)
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12: 01pm |
Lunch (Provided)
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1:15 pm
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The Gene Ontology (Michelle Gwinn-Giglio -Univ of Maryland)
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2:30 pm |
Break
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2:45 pm |
Introduction to GO Annotations (Candace Collmer -Wells College/Cornell,
Michelle Gwinn-Giglio- Univ of Maryland)
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4:20 pm
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VBI Tour
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5:00 pm
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On Your Own - Read papers and go through exercise for tomorrow
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Tuesday, July 15, 2008
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8:15 am
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Breakfast (Provided)
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9:15 am
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Introduction to PAMGO (Trudy Torto-Alalibo-VBI)
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10:00 am
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Bioinformatics Based GO Annotation: Magnaporthe grisea (Shaowu Meng-NCSU)
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10:45 am |
Break
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11:00 am
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Hands-On Exercise (PAMGO/GO annotations- Candace, Michelle, Trudy, Shaowu)
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12:01 pm |
Lunch (Provided)
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1:00 pm
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Hands-On Exercise Contd. (PAMGO/GO annotations- Candace, Michelle, Trudy, Shaowu)
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3.00 pm
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Introduction to Comparative Genomics (Joao Setubal/Tsai-Tien Tseng)
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3:45 pm
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Evaluation
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4. 00 pm |
Break and Group Photo
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5:00 pm
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On Your Own
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Wednesday, July 16, 2008
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8:15 am
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Breakfast (Provided)
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9:15 am
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VBI Microbial Database Genome and EST Databases (Sucheta Tripathy-VBI)
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10:30 am |
Break
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10:45 am
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PhIGs Synteny Resource (Brett Tyler-VBI)
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11:45 am |
Lunch (Provided)
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1:15 pm
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JGI Phytophthora Databases (Brett Tyler-VBI)
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1:45 pm
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Other Resources (Brett Tyler-VBI)
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2:30 pm |
Break
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2:45 pm |
Domain shuffling and fusion events has created novel metabolic and regulatory
pathways in the Phytophthora genomes: so what is "common" about Phytophthora?
(Paul Morris-Bowling Green University)
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3:30 pm
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Ortholog Detection in Hyaloperonospora parasitica (Marcus Chibucos -VBI)
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5:00 pm
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On Your Own
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Thursday, July 17th and Friday July 18th, 2008
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Hands-On: Comparative Genomics of Oomycete Genomes
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