| SATURDAY, October 28 |
| Tutorial Session |
|
1:00 p.m.
|
"Using PASA to automatically annotate gene structures and study
alternative splicing by leveraging high quality transcript
alignments," Brian J. Haas, The Institute for Genomic Research
|
|
2:10 p.m.
|
Break
|
|
2:20 p.m.
|
"The NCBI influenza virus resource," Yiming Bao, NCBI
|
|
3:30 p.m.
|
Break
|
|
3:40 p.m.
|
"Annotating infectious disease within reactome," Marc E. Gillespie, Cold Spring Harbor Laboratory
|
|
4:50 p.m.
|
Break
|
|
5:00 p.m.
|
Opening reception
|
|
6:00 p.m.
|
KEYNOTE: Barry Marshall, Nobel Laureate, 2005
|
| SUNDAY, October 29 |
|
7:45 a.m.
|
Continental Breakfast served until 8:45 a.m.
|
|
9:00 a.m.
|
"GEMINA: A web-based system to identify genomic data associated with
remicrobial pathogens of infectious diseases through selection of
related epidemiological information," Lynn M. Schriml, The Institute
for Genomic Research
|
|
9:20 a.m.
|
"Microbial genome analysis at the Broad Institute," Mark L. Borowsky, Broad Institute of MIT & Harvard
|
|
9:40 a.m.
|
"DOE Hanford Site Metagenome: a multiple extreme environment hosting
diverse microbes and radiotolerant bacteria," Mustafa H. Syed,
Argonne National Laboratory
|
|
10:00 a.m.
|
"Annotation of mycobacterium tuberculosis genomes at the Broad
Institute," Qiandong Zeng, Broad Institute of MIT & Harvard
|
|
10:20 a.m.
|
Break
|
|
10:40 a.m.
|
INVITED TALK
Olga Troyanskaya, Princeton University
|
|
11:30 a.m.
|
"Novel peptide identification using ESTs and genomic sequence," Nathan Edwards, University of Maryland
|
|
11:50 a.m.
|
"Small cysteine-rich peptides resembling antimicrobial peptides
have been under-predicted in plants," Kevin A. Silverstein,
University of Minnesota
|
|
12:10 p.m.
|
Lunch
|
|
1:30 p.m.
|
"The pathway tools cellular overview diagram and omics viewer," Suzanne M. Paley, SRI International
|
|
1:50 p.m.
|
"Applying genome context data to the search for missing enzymes in
Pathway/Genome databases," Michelle L. Green, SRI International
|
|
2:10 p.m.
|
"From properties to processes: context-driven automatic assignment of GO
process terms using the Genome Properties System," Jeremy D. Selengut,
The Institute for Genomic Research
|
|
2:30 p.m.
|
"Comprehensive DNA signature identification," Adam M. Phillippy, University of Maryland
|
|
2:50 p.m.
|
Break
|
|
3:10 p.m.
|
"Interactive visual analytic tools for genome assembly," Michael C. Schatz, University of Maryland
|
|
3:30 p.m.
|
INVITED TALK
Joel Bader, Johns Hopkins University
|
|
4:20 p.m.
|
Break
|
|
4:30 p.m.
|
TUTORIAL
"Comprehensive microbial resource and pathema," Tanja M. Davidsen, The Institute for Genomic Research
|
|
5:40 p.m.
|
Reception & Poster session
|
| MONDAY, October 30 |
|
7:45 a.m.
|
Continental Breakfast served until 8:45 a.m.
|
|
9:00 a.m.
|
"Automated annotation of the mosquito Aedes aegypti," Jennifer R.
Wortman, The Institute for Genomic Research
|
|
9:20 a.m.
|
"Multi-scale analysis of large influenza sequence datasets," Leonid Zaslavsky, NCBI
|
|
9:40 a.m.
|
"Co-evolutionary analysis of domains in interacting proteins reveals
insights into domain-domain interactions mediating protein-protein
interactions," Raja Jothi, NCBI
|
|
10:00 a.m.
|
Break
|
|
10:20 a.m.
|
"Identifying bidirectional gene pairs on a comprehensive scale," Laura Elnitski, NIH
|
|
10:40 a.m.
|
"Computational search for transcription factor binding sites," Marko Djordjevic, Ohio State University
|
|
11:00 a.m.
|
INVITED TALK
Tim Hubbard, Sanger Centre
|
|
11:50 a.m.
|
Lunch
|
|
1:30 p.m.
|
"Statistical methods for analysis of ChIP-chip data," Peter J. Park, Children's Hospital Boston
|
|
1:50 p.m.
|
"A novel approach for accurate prediction of HIV-1 drug resistance
mutations," Majid Masso, George Mason University
|
|
2:10 p.m.
|
OPEN
|
|
2:10 p.m.
|
"Computational screening of candidate human non-coding RNAs and
functional annotation," Yongmei Ji, Rosetta/Merck & Co.
|
|
2:30 p.m.
|
"Structure, function and environment of proteins," Jim Warwicker, University of Manchester
|
|
2:50 p.m.
|
Break
|
|
3:10 p.m.
|
"Using sequence domain boundaries as queries in VAST structure
alignments," Kenneth E. Thompson, Johns Hopkins University/NCBI
|
|
3:30 p.m.
|
KEYNOTE: "Reconstructing 100 million years of human evolutionary
history," David Haussler, University of California, Santa Cruz
|
|
4:20 p.m.
|
Break
|
|
4:30 p.m.
|
TUTORIAL
"The National Microbial Pathogen Data Resource (NMPDR): a
tutorial for effective use of NMPDR's bioinformatics environment,"
Leslie McNeil and Claudia Reich, University of Illinois
|
|
5:40 p.m.
|
Reception & Poster session
|
| TUESDAY, October 31 |
|
7:45 a.m.
|
Continental Breakfast served until 8:45 a.m.
|
|
9:00 a.m.
|
"Bioinformatics resources for the systems-level analysis of innate
immunity: the InnateDB interaction database and a novel method for the
pathway-like layout of biological networks," Jennifer L. Gardy,
University of British Columbia
|
|
9:20 a.m.
|
"Information theoretic approach to constructing gene regulatory networks
from gene expression and polymorphic markers," Manjunatha N. Jagalur,
UMass Amherst
|
|
9:40 a.m.
|
"Network Legos: building blocks of cellular wiring diagrams," T. M. Murali, Virginia Tech
|
|
10:00 a.m.
|
INVITED TALK
"Genomic studies of the domestic cat (Felis catus),"
Alejandro Schaffer, NCBI
|
|
10:50 a.m.
|
Concluding remarks
|
| Poster sessions:
|
Sunday, October 29: 5:40 p.m.
Monday, October 30: 5:40 p.m.
|
